miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|125428796|gb|EL440768.1|EL440768 CGCGGGGCCCTAGATCCACATTGAATCATCAAGAACCAATTTTCATTCGAATCTTTGCAAATTTCGCCTTGAATTTCAAT
TAATACTCCAAGCATGGTTGGCGGTACAGCTCATCAACCGCAACAAGCTCCTCAATTGGCTCGTACATCGTCATCAACAG
CAGCTCAGTCTACTGCACCGGAGGAAGATGAGCTCTTGAAAAGAAACACCGATTGCGTTTATTTTCTTGCTTCTCCATTA
ACCTGCAAAAAGGGAAGTGAGTGCGAGTATCGGCATAGCGATATTGCACGGGTCAACCCTAGAGATTGCTGGTACTGGTT
AAACGGGAATTGCTTAAATCCAAAATGTGCTTTCCGTCACCCTCCTCTTGATGGATTGCTGGGATCTGACGTGTCGACTC
CCAAGGGACCTCCTGCACCTGCACCGTATGCTACGCCCAAACAAGGAGTTGCGTGTATCTTCTTTCAAAAAGGTTACTGT
TTGAAAGGACACTTATGCCCTTTCTTGCACGGGCCATCAAATTCATTCAACAATAAACCTACACAGCCCGGGTCAGCTAT
TCCTGTCACCGAGCCTCCTAAAACGGTTCAACAAGTATCCGTCCACAAGCCCGTTGAGTTTCAGCCTTCTCAGGGAAAAC
AACCACCTCTTCCAACCAGAAACGGCGTTGATAAAAAGATAGCACCACCAGCCGTGGTTCCGCCACCTGTCATCAATGAA
CCACCGTCTAACAAACCTAACCGTAGTTATCACGCAACCAACGGAAGAATTGTTAATGGGAAAGATGCTGAGGAATATTC
AAGAGAACCTTCCCCTGGTTTTGATGTTCTTGTGGATAACGAAGTTGAAGATGCTGGCCATGA




Most similar to sp|Q9ZUM0|C3H17_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9ZUM0|C3H17_ARATH Zinc finger CCCH domain-containing protein 17
           OS=Arabidopsis thaliana GN=At2g02160 PE=1 SV=1
          Length = 669

 Score =  193 bits (491), Expect = 1e-48
 Identities = 112/258 (43%), Positives = 138/258 (53%), Gaps = 34/258 (13%)
 Frame = +1

Query: 184 EDELLKRNTDCVYFLASPLTCKKGSECEYRHSDIARVNPRDCWYWLNGNCLNPKCAFRHP 363
           E++ LK NTDCVYFLASPLTCKKG ECEYRHS+ AR+NPRDC+YWLNGNCLNPKC FRHP
Sbjct: 25  EEDALKWNTDCVYFLASPLTCKKGPECEYRHSEYARMNPRDCYYWLNGNCLNPKCGFRHP 84

Query: 364 PLDGLLGSDVSTPKGPPAPAPYAT------PKQGVACIFFQKGYCLKGHLCPFLHGPSNS 525
           PL+GLLG+    P     P  +AT       KQ V C+FFQKG C+KG +C FLH P N 
Sbjct: 85  PLEGLLGNQGGAPAVSVQPI-HATAQHPSVAKQPVPCLFFQKGMCMKGDMCSFLHTP-NP 142

Query: 526 FNNKPTQPGSAIPVTEP------------PKTVQQVSVHKPVE---------------FQ 624
              K   P  A P T+P             K +  V++ K V+                +
Sbjct: 143 AAYKKQHPVEAKPATDPQCSKKPIENNTEEKKLPDVNLSKVVKGHTDISAAPRVASTGLR 202

Query: 625 PSQGKQPPLPTRNGVDXXXXXXXXXXXXXXXXXXXXXXNRSYHA-TNGRIVNGKDAEEYS 801
            S+  +  +P   G +                       + Y +  N    NGKDA++  
Sbjct: 203 DSRSVEGYIPNHVGYEPVVQRKGPGFPSFTEGGHSTQLLQKYGSDDNNSFHNGKDADDVL 262

Query: 802 REPSPGFDVLVDNEVEDA 855
           RE SPGFDVLVDNE  D+
Sbjct: 263 RESSPGFDVLVDNEAGDS 280